Installation

Visualizing H-bonds identified via Hbind is a 3-step process:

1. Generating an Hbind interaction table
2. Creating the PyMOL visualization commands via HbindViz' hbind_pymol_cmds.py Python script
3. Executing the generated PyMOL commands to visualize hydrogen-bonds in PyMOL

Installing interaction tools

No installation is required to run the hbind_pymol_cmds.py Python script, which is available in the code subdirectory at https://github.com/psa-lab/HbindViz. (Python 3.6 or greater is recommended.)

However, running the visualization script requires an installation of Hbind, which is freely available at https://github.com/psa-lab/Hbind. Please visit the Installation page at https://psa-lab.github.io/hbind/installation for more information.